miRBase entry: cpo-mir-379

Stem-loop cpo-mir-379


Accession
MI0038759
Description
Cavia porcellus cpo-mir-379 precursor miRNA


Sequence

UGGUAGACUAUGGAACGUAGGcguuaugauuuuugaccUAUGUAACAUGGUCCACUAAC
((((.(((((((..(((((((((..........)).)))))))..))))))).))))..

Structure
--    A       GA       -  uuau 
  UGGU GACUAUG  ACGUAGG cg    g
  |||| |||||||  ||||||| ||     
  AUCA CUGGUAC  UGUAUcc gu    a
CA    C       AA       a  uuuu 


Annotation confidence Not enough data
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Genome context
DS562966.1: 1082082-1082140 [+]
Clustered miRNAs
11 other miRNAs are < 10 kb from cpo-mir-379
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-379-5p

Accession MIMAT0047221
Description Cavia porcellus cpo-miR-379-5p mature miRNA
Sequence 1 - UGGUAGACUAUGGAACGUAGG - 21
Evidence experimental
Illumina [1]

Mature cpo-miR-379-3p

Accession MIMAT0047222
Description Cavia porcellus cpo-miR-379-3p mature miRNA
Sequence 39 - UAUGUAACAUGGUCCACUAAC - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344