miRBase entry: cpo-mir-339

Stem-loop cpo-mir-339


Accession
MI0038736
Description
Cavia porcellus cpo-mir-339 precursor miRNA


Sequence

UCCCUGUCCUCCAGGAGCUCACGuaugccugcuugUGAGCGCCUCGAUGACAGAGCCG
...(((((.((.(((.(((((((..........))))))).))).)).))))).....

Structure
--UCC     C  C   A       uaug 
     CUGUC UC AGG GCUCACG    c
     ||||| || ||| |||||||     
     GACAG AG UCC CGAGUgu    c
GCCGA     U  C   G       ucgu 


Annotation confidence Not enough data
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Genome context
DS562885.1: 12803260-12803317 [+]

Database links

Mature cpo-miR-339-5p

Accession MIMAT0047176
Description Cavia porcellus cpo-miR-339-5p mature miRNA
Sequence 1 - UCCCUGUCCUCCAGGAGCUCACG - 23
Evidence experimental
Illumina [1]

Mature cpo-miR-339-3p

Accession MIMAT0047177
Description Cavia porcellus cpo-miR-339-3p mature miRNA
Sequence 36 - UGAGCGCCUCGAUGACAGAGCCG - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344