miRBase entry: cpo-mir-302a

Stem-loop cpo-mir-302a


Accession
MI0038721
Description
Cavia porcellus cpo-mir-302a precursor miRNA


Sequence

ACUUAAACGUGGACGUACUUGCUuuggaagcgagaaagUAAGUGCUUCCAUGUUUCGGUGAugg
(((.(((((((((.(((((((((((.........))))))))))).))))))))).))).....

Structure
-----   U         C           gga 
     ACU AAACGUGGA GUACUUGCUuu   a
     ||| ||||||||| |||||||||||   g
     UGG UUUGUACCU CGUGAAUgaaa   c
gguAG   C         U           gag 


Annotation confidence Not enough data
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Genome context
DS562898.1: 11471972-11472035 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from cpo-mir-302a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-302a-5p

Accession MIMAT0047146
Description Cavia porcellus cpo-miR-302a-5p mature miRNA
Sequence 1 - ACUUAAACGUGGACGUACUUGCU - 23
Evidence experimental
Illumina [1]

Mature cpo-miR-302a-3p

Accession MIMAT0047147
Description Cavia porcellus cpo-miR-302a-3p mature miRNA
Sequence 39 - UAAGUGCUUCCAUGUUUCGGUGA - 61
Evidence not_experimental

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344