miRBase entry: cpo-mir-200c

Stem-loop cpo-mir-200c

Accession

MI0038694

Description

Cavia porcellus cpo-mir-200c precursor miRNA

Sequence

CGUCUUACCCUGCAGUGUUUGGgugcugguuuggucucUAAUACUGCCGGGUAAUGAUGGAgg
((((((((((.((((((((.(((.(((.....)))))).)))))))).)))))).))))....

Structure

----    -      U        U   u   g 
    CGUC UUACCC GCAGUGUU GGg gcu g
    |||| |||||| |||||||| ||| ||| u
    GUAG AAUGGG CGUCAUAA cuc ugg u
ggAG    U      C        U   -   u

Annotation confidence Not enough data

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Genome context

DS562962.1: 310456-310518 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-200c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-200c-5p

Accession	MIMAT0047093
Description	Cavia porcellus cpo-miR-200c-5p mature miRNA
Sequence	1 - CGUCUUACCCUGCAGUGUUUGG - 22
Evidence	not_experimental

Mature cpo-miR-200c-3p

Accession	MIMAT0047094
Description	Cavia porcellus cpo-miR-200c-3p mature miRNA
Sequence	39 - UAAUACUGCCGGGUAAUGAUGGA - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344