miRBase entry: cpo-mir-188

Stem-loop cpo-mir-188


Accession
MI0038676
Description
Cavia porcellus cpo-mir-188 precursor miRNA


Sequence

CAUCCCUUGCAUGGUGGAGGGugagcuuucuggaaacccCUCCCACAUGCAGGGUUUGCA
((..(((((((((..((((((....((....))....))))))..)))))))))..))..

Structure
--  UC         GU      ugag  u 
  CA  CCUUGCAUG  GGAGGG    cu u
  ||  |||||||||  ||||||    ||  
  GU  GGGACGUAC  CCUCcc    gg c
AC  UU         AC      caaa  u 


Annotation confidence Not enough data
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Genome context
DS562987.1: 3003465-3003524 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from cpo-mir-188
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-188-5p

Accession MIMAT0047060
Description Cavia porcellus cpo-miR-188-5p mature miRNA
Sequence 1 - CAUCCCUUGCAUGGUGGAGGG - 21
Evidence experimental
Illumina [1]

Mature cpo-miR-188-3p

Accession MIMAT0047061
Description Cavia porcellus cpo-miR-188-3p mature miRNA
Sequence 40 - CUCCCACAUGCAGGGUUUGCA - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344