miRBase entry: cpo-mir-154

Stem-loop cpo-mir-154


Accession
MI0038663
Description
Cavia porcellus cpo-mir-154 precursor miRNA


Sequence

UAGGUUAUCCGUGUUGCCUUCGuuuuauuuaugucgAAUCAUACGCGGUUGACCUAUU
(((((((.((((((....((((............))))....)))))).)))))))..

Structure
--       U      UGCC    uuuua 
  UAGGUUA CCGUGU    UUCG     u
  ||||||| ||||||    ||||      
  AUCCAGU GGCGCA    AAgc     u
UU       U      UACU    uguau 


Annotation confidence Not enough data
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Genome context
DS562966.1: 1112305-1112362 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from cpo-mir-154
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-154-5p

Accession MIMAT0047036
Description Cavia porcellus cpo-miR-154-5p mature miRNA
Sequence 1 - UAGGUUAUCCGUGUUGCCUUCG - 22
Evidence experimental
Illumina [1]

Mature cpo-miR-154-3p

Accession MIMAT0047037
Description Cavia porcellus cpo-miR-154-3p mature miRNA
Sequence 37 - AAUCAUACGCGGUUGACCUAUU - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344