miRBase entry: cpo-mir-145

Stem-loop cpo-mir-145


Accession
MI0038652
Description
Cavia porcellus cpo-mir-145 precursor miRNA

Literature search
2 open access papers mention cpo-mir-145
(3 sentences)

Sequence

GUCCAGUUUUCCCAGGAAUCCCUuggaugcuaagauggGGAUUCCUGGAAAUACUGUUCUU
...((((.((.((((((((((((.............)))))))))))).)).)))).....

Structure
--GUC    U  C            uggau 
     CAGU UU CCAGGAAUCCCU     g
     |||| || ||||||||||||     c
     GUCA AA GGUCCUUAGGgg     u
UUCUU    U  A            uagaa 


Annotation confidence Not enough data
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Genome context
DS562861.1: 11377829-11377889 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpo-mir-145
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-145-5p

Accession MIMAT0047014
Description Cavia porcellus cpo-miR-145-5p mature miRNA
Sequence 1 - GUCCAGUUUUCCCAGGAAUCCCU - 23
Evidence experimental
Illumina [1]

Mature cpo-miR-145-3p

Accession MIMAT0047015
Description Cavia porcellus cpo-miR-145-3p mature miRNA
Sequence 39 - GGAUUCCUGGAAAUACUGUUCUU - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344