miRBase entry: cpo-mir-30e

Stem-loop cpo-mir-30e


Accession
MI0038595
Description
Cavia porcellus cpo-mir-30e precursor miRNA


Sequence

UGUAAACAUCCUUGACUGGAAGCUguaaaguguucagaggagCUUUCAGUCGGAUGUUUACAGC
(((((((((((..(((((((((((................))))))))))))))))))))))..

Structure
--           UU           guaaagu 
  UGUAAACAUCC  GACUGGAAGCU       g
  |||||||||||  |||||||||||        
  ACAUUUGUAGG  CUGACUUUCga       u
CG           --           ggagacu 


Annotation confidence Not enough data
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Genome context
DS563035.1: 168140-168203 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpo-mir-30e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-30e-5p

Accession MIMAT0046912
Description Cavia porcellus cpo-miR-30e-5p mature miRNA
Sequence 1 - UGUAAACAUCCUUGACUGGAAGCU - 24
Evidence experimental
Illumina [1]

Mature cpo-miR-30e-3p

Accession MIMAT0046913
Description Cavia porcellus cpo-miR-30e-3p mature miRNA
Sequence 43 - CUUUCAGUCGGAUGUUUACAGC - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344