miRBase entry: cpo-mir-30d

Stem-loop cpo-mir-30d


Accession
MI0038594
Description
Cavia porcellus cpo-mir-30d precursor miRNA


Sequence

UGUAAACAUCCCCGACUGGAAGCUguacaacacagcugagCUUUCAGUCAGAUGUUUGCUGC
.(((((((((...(((((((((((..............))))))))))).)))))))))...

Structure
--U         CCC           guacaa 
   GUAAACAUC   GACUGGAAGCU      c
   |||||||||   |||||||||||       
   CGUUUGUAG   CUGACUUUCga      a
CGU         --A           gucgac 


Annotation confidence Not enough data
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Genome context
DS562906.1: 2020362-2020423 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpo-mir-30d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-30d-5p

Accession MIMAT0046910
Description Cavia porcellus cpo-miR-30d-5p mature miRNA
Sequence 1 - UGUAAACAUCCCCGACUGGAAGCU - 24
Evidence experimental
Illumina [1]

Mature cpo-miR-30d-3p

Accession MIMAT0046911
Description Cavia porcellus cpo-miR-30d-3p mature miRNA
Sequence 41 - CUUUCAGUCAGAUGUUUGCUGC - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344