miRBase entry: cpo-mir-30c-1

Stem-loop cpo-mir-30c-1

Accession

MI0038592

Description

Cavia porcellus cpo-mir-30c-1 precursor miRNA

Sequence

UGUAAACAUCCUACACUCUCAGCUgugagcucgagguagCUGGGAGAGGGCUGUUUACUCC
.(((((((.(((...((((((((((...........)))))))))).))).)))))))...

Structure

--U       U   ACA          ugag 
   GUAAACA CCU   CUCUCAGCUg    c
   ||||||| |||   ||||||||||    u
   CAUUUGU GGG   GAGGGUCgau    c
CCU       C   --A          ggag

Annotation confidence Not enough data

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Genome context

DS563035.1: 170974-171034 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-30c-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-30c-5p

Accession	MIMAT0046907
Description	Cavia porcellus cpo-miR-30c-5p mature miRNA
Sequence	1 - UGUAAACAUCCUACACUCUCAGCU - 24
Evidence	experimental Illumina [1]

Mature cpo-miR-30c-3p

Accession	MIMAT0046908
Description	Cavia porcellus cpo-miR-30c-3p mature miRNA
Sequence	40 - CUGGGAGAGGGCUGUUUACUCC - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344