miRBase entry: cpo-mir-30b

Stem-loop cpo-mir-30b


Accession
MI0038591
Description
Cavia porcellus cpo-mir-30b precursor miRNA


Sequence

UGUAAACAUCCUACACUCAGCUguaauauaugaauuggCUGGGAGGUGGGUGUUUACUUC
.(((((((.(((((.((((((((............))))))))..))))))))))))...

Structure
--U       U     -A        uaaua 
   GUAAACA CCUAC  CUCAGCUg     u
   ||||||| |||||  ||||||||      
   CAUUUGU GGGUG  GGGUCggu     a
CUU       -     GA        uaagu 


Annotation confidence Not enough data
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Genome context
DS562906.1: 2026508-2026567 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpo-mir-30b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-30b-5p

Accession MIMAT0046905
Description Cavia porcellus cpo-miR-30b-5p mature miRNA
Sequence 1 - UGUAAACAUCCUACACUCAGCU - 22
Evidence experimental
Illumina [1]

Mature cpo-miR-30b-3p

Accession MIMAT0046906
Description Cavia porcellus cpo-miR-30b-3p mature miRNA
Sequence 39 - CUGGGAGGUGGGUGUUUACUUC - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344