miRBase entry: cpo-mir-27a

Stem-loop cpo-mir-27a


Accession
MI0038583
Description
Cavia porcellus cpo-mir-27a precursor miRNA

Literature search
1 open access papers mention cpo-mir-27a
(3 sentences)

Sequence

AGGGCUUAGCUGCUUGUGAGCAggguucccaccaggcgugUUCACAGUGGCUAAGUUCCGU
.(((((((((((((.(((((((.(.((......)).).))))))))))))))))))))...

Structure
--A             U       g g  cc 
   GGGCUUAGCUGCU GUGAGCA g uu  c
   ||||||||||||| ||||||| | ||   
   CUUGAAUCGGUGA CACUUgu c ga  a
UGC             -       g g  cc 


Annotation confidence Not enough data
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Genome context
DS562897.1: 12931848-12931908 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cpo-mir-27a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-27a-5p

Accession MIMAT0046890
Description Cavia porcellus cpo-miR-27a-5p mature miRNA
Sequence 1 - AGGGCUUAGCUGCUUGUGAGCA - 22
Evidence experimental
Illumina [1]

Mature cpo-miR-27a-3p

Accession MIMAT0046891
Description Cavia porcellus cpo-miR-27a-3p mature miRNA
Sequence 41 - UUCACAGUGGCUAAGUUCCGU - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344