miRBase entry: cpo-mir-23a

Stem-loop cpo-mir-23a

Accession

MI0038575

Description

Cavia porcellus cpo-mir-23a precursor miRNA

Sequence

GGGGUUCCUGGGGAUGGGAUUUgcugucugucacaaAUCACAUUGCCAGGGAUUUCCAA
(((((((((((.((((.((((((.((.....)))))))).)))).)))))))))))...

Structure

---           G    G      c  u 
   GGGGUUCCUGG GAUG GAUUUg ug c
   ||||||||||| |||| |||||| || u
   CUUUAGGGACC UUAC CUAaac ac g
AAC           G    A      -  u

Annotation confidence Not enough data

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Genome context

DS562897.1: 12931646-12931704 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpo-mir-23a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-23a-5p

Accession	MIMAT0046876
Description	Cavia porcellus cpo-miR-23a-5p mature miRNA
Sequence	1 - GGGGUUCCUGGGGAUGGGAUUU - 22
Evidence	experimental Illumina [1]

Mature cpo-miR-23a-3p

Accession	MIMAT0046877
Description	Cavia porcellus cpo-miR-23a-3p mature miRNA
Sequence	37 - AUCACAUUGCCAGGGAUUUCCAA - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344