miRBase entry: cpo-let-7f-1

Stem-loop cpo-let-7f-1

Accession

MI0038547

Description

Cavia porcellus cpo-let-7f-1 precursor miRNA

Sequence

ucagagUGAGGUAGUAGAUUGUAUAGUUgugggguagugauuuuacccuguuuaggagauaaCUAUACAAUCUAUUGCCUUCCC
.......((((((((((((((((((((((((((((((.....))))))).........)))))))))))))))))))))))...

Structure

ucagagU                       ---------       u 
       GAGGUAGUAGAUUGUAUAGUUgu         gggguag g
       |||||||||||||||||||||||         ||||||| a
       UUCCGUUAUCUAACAUAUCaaua         ucccauu u
----CCC                       gaggauuug       u

Annotation confidence Not enough data

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Genome context

DS562897.1: 102055-102138 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpo-let-7f-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-let-7f-5p

Accession	MIMAT0046828
Description	Cavia porcellus cpo-let-7f-5p mature miRNA
Sequence	7 - UGAGGUAGUAGAUUGUAUAGUU - 28
Evidence	experimental Illumina [1]

Mature cpo-let-7f-3p

Accession	MIMAT0046829
Description	Cavia porcellus cpo-let-7f-3p mature miRNA
Sequence	63 - CUAUACAAUCUAUUGCCUUCCC - 84
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344