miRBase entry: cpo-let-7a-2

Stem-loop cpo-let-7a-2


Accession
MI0038541
Description
Cavia porcellus cpo-let-7a-2 precursor miRNA


Sequence

UGAGGUAGUAGGUUGUAUAGUUuagaauuacaucaagggagauaaCUGUACAGCCUCCUAGCUUUCC
.(((.(((.(((((((((((((.........(((......)))))))))))))))).))).)))...

Structure
--U   G   U             uagaauuac   aa 
   GAG UAG AGGUUGUAUAGUU         auc  g
   ||| ||| |||||||||||||         |||   
   UUC AUC UCCGACAUGUCaa         uag  g
CCU   G   C             ---------   ag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
DS562874.1: 26138016-26138082 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpo-let-7a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-let-7a-5p

Accession MIMAT0046817
Description Cavia porcellus cpo-let-7a-5p mature miRNA
Sequence 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
Evidence experimental
Illumina [1]

Mature cpo-let-7a-2-3p

Accession MIMAT0046819
Description Cavia porcellus cpo-let-7a-2-3p mature miRNA
Sequence 46 - CUGUACAGCCUCCUAGCUUUCC - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344