Stem-loop sequence bta-mir-2285ci

Accession

MI0038397 (change log)

Description

Bos taurus miR-2285ci stem-loop

Literature search

11 open access papers mention bta-mir-2285ci
(15 sentences)

Stem-loop

   --           ug        cacacc 
5'   aaaaguucguu  gguuuuuc      a
     |||||||||||  ||||||||       
3'   uuuucaaguaa  ccaaagag      u
   gg           gu        acauuc 

Deep sequencing

9598 reads, 38.6 reads per million, 70 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chrX: 2997906-2997963 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0038397

Mature sequence bta-miR-2285ci

• Accession: MIMAT0046672
• Sequence: 38 - gaaaccugaaugaacuuuugg - 58
• Deep sequencing: 3759 reads, 70 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:26519053 "Deep sequencing shows microRNA involvement in bovine mammary gland adaptation to diets supplemented with linseed oil or safflower oil" Li R, Beaudoin F, Ammah AA, Bissonnette N, Benchaar C, Zhao X, Lei C, Ibeagha-Awemu EM BMC Genomics. 16:884(2015).