Stem-loop sequence bta-mir-2285ca

Accession

MI0038374 (change log)

Description

Bos taurus miR-2285ca stem-loop

Literature search

11 open access papers mention bta-mir-2285ca
(15 sentences)

Stem-loop

   -c        u  ug      -c      c 
5'   aaaaguuc uu  gguuuu  ccauaa a
     |||||||| ||  ||||||  ||||||  
3'   uuuucaag aa  ccaggg  gguauu u
   gu        u  gu      aa      c 

Deep sequencing

702 reads, 2.94 reads per million, 68 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr5: 110404881-110404940 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0038374

Mature sequence bta-miR-2285ca

• Accession: MIMAT0046650
• Sequence: 38 - aagggaccugaaugaacuuuuug - 60
• Deep sequencing: 433 reads, 67 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:26519053 "Deep sequencing shows microRNA involvement in bovine mammary gland adaptation to diets supplemented with linseed oil or safflower oil" Li R, Beaudoin F, Ammah AA, Bissonnette N, Benchaar C, Zhao X, Lei C, Ibeagha-Awemu EM BMC Genomics. 16:884(2015).