miRBase entry: xla-mir-98

Stem-loop xla-mir-98


Accession
MI0038343
Description
Xenopus laevis xla-mir-98 precursor miRNA


Sequence

UGAGGUAGUAAGUUGUAUUGUUguggggguguuucauuuccccaaauuaggagauaaCUAUACAGUUUACUGCCUUCCC
.(((((((((((((((((.((((((((((.........))))))..........)))).)))))))))))))))))...

Structure
--U                 U    ----------      ugu 
   GAGGUAGUAAGUUGUAU GUUg          uggggg   u
   ||||||||||||||||| ||||          ||||||   u
   UUCCGUCAUUUGACAUA Caau          accccu   c
CCC                 U    agaggauuaa      uua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr8S: 36774667-36774745 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from xla-mir-98
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xla-miR-98-5p

Accession MIMAT0046617
Description Xenopus laevis xla-miR-98-5p mature miRNA
Sequence 1 - UGAGGUAGUAAGUUGUAUUGUU - 22
Evidence experimental
Illumina [1]

Mature xla-miR-98-3p

Accession MIMAT0046618
Description Xenopus laevis xla-miR-98-3p mature miRNA
Sequence 58 - CUAUACAGUUUACUGCCUUCCC - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26548531
    Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
    "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
    "Dev Biol (2016) 409:26-38