Stem-loop sequence xla-mir-92a-4

Accession

MI0038339 (change log)

Description

Xenopus laevis miR-92a-4 stem-loop

Literature search

2 open access papers mention xla-mir-92a-4
(2 sentences)

Stem-loop

   --          u   u         u cua 
5'   agguugggau ggu gcaaugcug c   u
     |||||||||| ||| ||||||||| |    
3'   uccggcccug uca cguuaugau g   u
   ug          u   -         - uau 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JGIv8.0): chr2S: 91488294-91488353 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from xla-mir-92a-4

• xla-mir-17-1: chr2S: 91488970-91489030 [-]
• xla-mir-18b: chr2S: 91488841-91488903 [-]
• xla-mir-19b-2: chr2S: 91488415-91488476 [-]
• xla-mir-92a-4: chr2S: 91488294-91488353 [-]

Database links

• miRBase Tracker:MI0038339

Mature sequence xla-miR-92a-4-5p

• Accession: MIMAT0046610
• Sequence: 1 - agguugggauugguugcaaugcu - 23
• Evidence: experimental; Illumina [1]

Mature sequence xla-miR-92a-3p

• Accession: MIMAT0011149
• Sequence: 39 - uauugcacuugucccggccugu - 60
• Evidence: by similarity; MI0003106

References

1. PMID:26548531 "Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1" Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK Dev Biol. 409:26-38(2016).