miRBase entry: xla-mir-222

Stem-loop xla-mir-222

Accession

MI0038302

Description

Xenopus laevis xla-mir-222 precursor miRNA

Sequence

GCUCAGUAAUCAGUGUAGAUCCuguauuucugucagcAGCUACAUCUGGCUACUGGGUCU
((((((((.(((((((((...(((.((....)))))...))))).)))).))))))))..

Structure

--        A    -     AUC   u  u 
  GCUCAGUA UCAG UGUAG   Cug au u
  |||||||| |||| |||||   ||| ||  
  UGGGUCAU GGUC ACAUC   gac ug c
UC        C    U     GAc   -  u

Annotation confidence Not enough data

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Genome context

chr2S: 44258250-44258309 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xla-mir-222

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature xla-miR-222-5p

Accession	MIMAT0046544
Description	Xenopus laevis xla-miR-222-5p mature miRNA
Sequence	1 - GCUCAGUAAUCAGUGUAGAUCC - 22
Evidence	experimental Illumina [1]

Mature xla-miR-222-3p

Accession	MIMAT0046545
Description	Xenopus laevis xla-miR-222-3p mature miRNA
Sequence	38 - AGCUACAUCUGGCUACUGGGUCU - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 26548531
Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
"Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
"Dev Biol (2016) 409:26-38