miRBase entry: xla-mir-22

Stem-loop xla-mir-22


Accession
MI0038300
Description
Xenopus laevis xla-mir-22 precursor miRNA

Literature search
1 open access papers mention xla-mir-22
(4 sentences)

Sequence

CAGUUCUUCAGUGGCAAGCUUUAuguuguucuucugugcuaAAGCUGCCAGUUGAAGAACUGUU
((((((((((((((((.((((((.((...........))))))))))))).)))))))))))..

Structure
--           -     A      u  uguu 
  CAGUUCUUCAG UGGCA GCUUUA gu    c
  ||||||||||| ||||| |||||| ||    u
  GUCAAGAAGUU ACCGU CGAAau cg    u
UU           G     -      -  uguc 


Annotation confidence Not enough data
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Genome context
chr2S: 33069168-33069231 [-]

Database links

Mature xla-miR-22-5p

Accession MIMAT0046540
Description Xenopus laevis xla-miR-22-5p mature miRNA
Sequence 1 - CAGUUCUUCAGUGGCAAGCUUUA - 23
Evidence experimental
Illumina [1]

Mature xla-miR-22-3p

Accession MIMAT0046541
Description Xenopus laevis xla-miR-22-3p mature miRNA
Sequence 42 - AAGCUGCCAGUUGAAGAACUGUU - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26548531
    Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
    "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
    "Dev Biol (2016) 409:26-38