miRBase entry: xla-mir-20a

Stem-loop xla-mir-20a


Accession
MI0038293
Description
Xenopus laevis xla-mir-20a precursor miRNA


Sequence

UAAAGUGCUUAUAGUGCAGGUAGuuuuuuguguauucuACUGCAUUAAGAGCACUUAAAGU
..((((((((.((((((((.(((..(.......)..))))))))))).)))))))).....

Structure
---UA        A        G   uu uu 
     AAGUGCUU UAGUGCAG UAG  u  u
     |||||||| |||||||| |||  |  g
     UUCACGAG AUUACGUC Auc  a  u
UGAAA        A        -   uu ug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr2L: 107332044-107332104 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from xla-mir-20a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xla-miR-20a-5p

Accession MIMAT0046528
Description Xenopus laevis xla-miR-20a-5p mature miRNA
Sequence 1 - UAAAGUGCUUAUAGUGCAGGUAG - 23
Evidence experimental
Illumina [1]

Mature xla-miR-20a-3p

Accession MIMAT0046529
Description Xenopus laevis xla-miR-20a-3p mature miRNA
Sequence 39 - ACUGCAUUAAGAGCACUUAAAGU - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26548531
    Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
    "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
    "Dev Biol (2016) 409:26-38