miRBase entry: xla-mir-18a-2

Stem-loop xla-mir-18a-2


Accession
MI0038277
Description
Xenopus laevis xla-mir-18a-2 precursor miRNA

Literature search
2 open access papers mention xla-mir-18a-2
(4 sentences)

Sequence

UAAGGUGCAUCUAGUGCAGUUAGugacauagcguagcaucUACUGCCCUAAAUGCUCCUUUU
.((((.((((.(((.(((((..(((.(........))))..))))).))).)))).))))..

Structure
-U    U    C   U     UA   a aua 
  AAGG GCAU UAG GCAGU  Gug c   g
  |||| |||| ||| |||||  ||| |    
  UUCC CGUA AUC CGUCA  uac g   c
UU    U    A   C     Uc   - aug 


Annotation confidence Not enough data
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Genome context
chr8S: 74307995-74308056 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from xla-mir-18a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xla-miR-18a-5p

Accession MIMAT0001349
Description Xenopus laevis xla-miR-18a-5p mature miRNA
Sequence 1 - UAAGGUGCAUCUAGUGCAGUUAG - 23
Evidence experimental
cloned [1]

Mature xla-miR-18a-3p

Accession MIMAT0046499
Description Xenopus laevis xla-miR-18a-3p mature miRNA
Sequence 41 - UACUGCCCUAAAUGCUCCUUUU - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26548531
    Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
    "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
    "Dev Biol (2016) 409:26-38