miRBase entry: xla-mir-143

Stem-loop xla-mir-143


Accession
MI0038254
Description
Xenopus laevis xla-mir-143 precursor miRNA


Sequence

GGUGCAGUGCUGCAUCUCUGGUcaauugugagucUGAGAUGAAGCACUGUAGCUC
(.(((((((((.((((((.(((((....))).)).)))))).))))))))).)..

Structure
-- G         G      U  -   a 
  G UGCAGUGCU CAUCUC GG Uca u
  | ||||||||| |||||| || |||  
  C AUGUCACGA GUAGAG cu agu u
CU G         A      U  g   g 


Annotation confidence Not enough data
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Genome context
chr3L: 26674090-26674144 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from xla-mir-143
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xla-miR-143-5p

Accession MIMAT0046456
Description Xenopus laevis xla-miR-143-5p mature miRNA
Sequence 1 - GGUGCAGUGCUGCAUCUCUGGU - 22
Evidence experimental
Illumina [1]

Mature xla-miR-143-3p

Accession MIMAT0046457
Description Xenopus laevis xla-miR-143-3p mature miRNA
Sequence 35 - UGAGAUGAAGCACUGUAGCUC - 55
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26548531
    Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
    "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
    "Dev Biol (2016) 409:26-38