Stem-loop sequence xla-mir-106

Accession

MI0038231 (change log)

Description

Xenopus laevis miR-106 stem-loop

Stem-loop

   --aa          a      g   aac 
5'     aagugcuuau gugcag uag   u
       |||||||||| |||||| |||   u
3'     uucacgaaug cacguc auc   a
   gucc          a      -   cag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JGIv8.0): chr8L: 48822350-48822405 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from xla-mir-106

• xla-mir-106: chr8L: 48822350-48822405 [-]
• xla-mir-18a-1: chr8L: 48822216-48822294 [-]
• xla-mir-20: chr8L: 48822066-48822139 [-]
• xla-mir-19b: chr8L: 48821956-48822028 [-]
• xla-mir-92a-2: chr8L: 48821825-48821900 [-]
• xla-mir-363: chr8L: 48821690-48821777 [-]

Database links

• miRBase Tracker:MI0038231

Mature sequence xla-miR-106-5p

• Accession: MIMAT0046418
• Sequence: 1 - aaaagugcuuauagugcagguag - 23
• Evidence: experimental; Illumina [1]

Mature sequence xla-miR-106-3p

• Accession: MIMAT0046419
• Sequence: 35 - acugcacaguaagcacuuccug - 56
• Evidence: experimental; Illumina [1]

References

1. PMID:26548531 "Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1" Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK Dev Biol. 409:26-38(2016).