miRBase entry: xla-mir-100-1

Stem-loop xla-mir-100-1


Accession
MI0038227
Description
Xenopus laevis xla-mir-100-1 precursor miRNA

Literature search
2 open access papers mention xla-mir-100-1
(6 sentences)

Sequence

AACCCGUAGAUCCGAACUUGUGcugugccccucucacaagcuCGAGUGUGCGGGUCUGUGUCGGCUUGG
...(((((((((((.(((((.((((((.......))).))).)))))...))))))))...))).....

Structure
--AAC   ---        --A     U   -   cc 
     CCG   UAGAUCCG   ACUUG Gcu gug  c
     |||   ||||||||   ||||| ||| |||  c
     GGC   GUCUGGGC   UGAGC cga cac  u
GGUUC   UGU        GUG     u   a   uc 


Annotation confidence Not enough data
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Genome context
chr7L: 113015055-113015123 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from xla-mir-100-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xla-miR-100-5p

Accession MIMAT0046409
Description Xenopus laevis xla-miR-100-5p mature miRNA
Sequence 1 - AACCCGUAGAUCCGAACUUGUG - 22
Evidence experimental
Illumina [1]

Mature xla-miR-100-3p

Accession MIMAT0046411
Description Xenopus laevis xla-miR-100-3p mature miRNA
Sequence 43 - CGAGUGUGCGGGUCUGUGUCGGCUUGG - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26548531
    Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
    "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
    "Dev Biol (2016) 409:26-38