miRBase entry: pte-mir-11965-1

Stem-loop pte-mir-11965-1


Accession
MI0038151
Description
Parasteatoda tepidariorum pte-mir-11965-1 precursor miRNA


Sequence

GAUAAAGGAAUUUUUGUUCAUAuguaaauaUGAACACAAAUUCCUUCAUCUC
(((.(((((((((.(((((((((....))))))))).))))))))).)))..

Structure
--   A         U         g 
  GAU AAGGAAUUU UGUUCAUAu u
  ||| ||||||||| |||||||||  
  CUA UUCCUUAAA ACAAGUaua a
CU   C         C         a 


Annotation confidence Not enough data
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Genome context
Scf5bK3_401: 1572416-1572467 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pte-mir-11965-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-11965-3p

Accession MIMAT0046317
Description Parasteatoda tepidariorum pte-miR-11965-3p mature miRNA
Sequence 31 - UGAACACAAAUUCCUUCAUCUC - 52
Evidence experimental
Illumina [1]

Mature pte-miR-11965-5p

Accession MIMAT0046324
Description Parasteatoda tepidariorum pte-miR-11965-5p mature miRNA
Sequence 1 - GAUAAAGGAAUUUUUGUUCAUA - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144