Stem-loop sequence pte-mir-11942a

Accession

MI0038112 (change log)

Description

Parasteatoda tepidariorum miR-11942a stem-loop

Literature search

1 open access papers mention pte-mir-11942a
(2 sentences)

Stem-loop

   -c u                    uguguu 
5'   g uaagacugucaguguuuggc      a
     | ||||||||||||||||||||      u
3'   c auucugacagucauaaaccg      a
   aa c                    ucuuuu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: Scf5bK3_165.1: 1758563-1758624 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0038112

Mature sequence pte-miR-11942a-5p

• Accession: MIMAT0046254
• Sequence: 1 - cguuaagacugucaguguuuggc - 23
• Evidence: experimental; Illumina [1]

Mature sequence pte-miR-11942a-3p

• Accession: MIMAT0046255
• Sequence: 41 - caaauacugacagucuuaccaa - 62
• Evidence: experimental; Illumina [1]

References

1. PMID:27324919 "Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum" Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP Genome Biol Evol. 8:2133-2144(2016).