miRBase entry: pte-mir-71-2

Stem-loop pte-mir-71-2


Accession
MI0038093
Description
Parasteatoda tepidariorum pte-mir-71-2 precursor miRNA

Literature search
2 open access papers mention pte-mir-71-2
(14 sentences)

Sequence

UGAAAGACAUGGGUAGUGAGAUGuguguaaauaguuucaUCUCACUACCUUGUCUUUGACG
..(((((((.(((((((((((((..............))))))))))))))))))))....

Structure
--UG       U             ugugua 
    AAAGACA GGGUAGUGAGAUG      a
    ||||||| |||||||||||||       
    UUUCUGU UCCAUCACUCUac      a
GCAG       -             uuugau 


Annotation confidence Not enough data
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Genome context
Scf5bK3_595: 731101-731161 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from pte-mir-71-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-71-5p

Accession MIMAT0046219
Description Parasteatoda tepidariorum pte-miR-71-5p mature miRNA
Sequence 1 - UGAAAGACAUGGGUAGUGAGAUG - 23
Evidence experimental
Illumina [1]

Mature pte-miR-71-3p

Accession MIMAT0046220
Description Parasteatoda tepidariorum pte-miR-71-3p mature miRNA
Sequence 40 - UCUCACUACCUUGUCUUUGACG - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144