miRBase entry: pte-mir-35r-2

Stem-loop pte-mir-35r-2

Accession

MI0038083

Description

Parasteatoda tepidariorum pte-mir-35r-2 precursor miRNA

Sequence

AGAAAUUUUUCAUCCCAGUUAAUUuuauuuuugaauuaaaUCACUGGGAGGAAAGUUUCUAU
(((((((((((.(((((((((((((.......))))))....))))))))))))))))))..

Structure

--           A       ----      ua 
  AGAAAUUUUUC UCCCAGU    UAAUUu  u
  ||||||||||| |||||||    ||||||  u
  UCUUUGAAAGG AGGGUCA    auuaag  u
UA           -       CUaa      uu

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

Scf5bK3_3068: 20244-20305 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from pte-mir-35r-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pte-miR-35r-5p

Accession	MIMAT0046208
Description	Parasteatoda tepidariorum pte-miR-35r-5p mature miRNA
Sequence	1 - AGAAAUUUUUCAUCCCAGUUAAUU - 24
Evidence	experimental Illumina [1]

Mature pte-miR-35r-3p

Accession	MIMAT0046209
Description	Parasteatoda tepidariorum pte-miR-35r-3p mature miRNA
Sequence	41 - UCACUGGGAGGAAAGUUUCUAU - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 27324919
Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
Genome Biol Evol (2016) 8:2133-2144