Stem-loop sequence pte-mir-35r-2

Accession

MI0038083 (change log)

Description

Parasteatoda tepidariorum miR-35r-2 stem-loop

Stem-loop

   --           a       ----      ua 
5'   agaaauuuuuc ucccagu    uaauuu  u
     ||||||||||| |||||||    ||||||  u
3'   ucuuugaaagg aggguca    auuaag  u
   ua           -       cuaa      uu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: Scf5bK3_3068: 20244-20305 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from pte-mir-35r-2

• pte-mir-35p: Scf5bK3_3068: 10790-10846 [+]
• pte-mir-35j-1: Scf5bK3_3068: 12165-12221 [+]
• pte-mir-35e-2: Scf5bK3_3068: 12460-12516 [+]
• pte-mir-35n-1: Scf5bK3_3068: 16552-16610 [+]
• pte-mir-35q-1: Scf5bK3_3068: 17321-17380 [+]
• pte-mir-35q-1: Scf5bK3_3068: 17457-17516 [+]
• pte-mir-35r-2: Scf5bK3_3068: 20244-20305 [+]

Database links

• miRBase Tracker:MI0038083

Mature sequence pte-miR-35r-5p

• Accession: MIMAT0046208
• Sequence: 1 - agaaauuuuucaucccaguuaauu - 24
• Evidence: experimental; Illumina [1]

Mature sequence pte-miR-35r-3p

• Accession: MIMAT0046209
• Sequence: 41 - ucacugggaggaaaguuucuau - 62
• Evidence: experimental; Illumina [1]

References

1. PMID:27324919 "Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum" Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP Genome Biol Evol. 8:2133-2144(2016).