Stem-loop sequence pte-mir-35y

Accession

MI0038080 (change log)

Description

Parasteatoda tepidariorum miR-35y stem-loop

Stem-loop

   --     -      gc      g   uga 
5'   agcaa ugaaug  uuggug cag   c
     ||||| ||||||  |||||| |||    
3'   ucguu acuugc  aaccac guc   u
   uu     u      uu      a   cgc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: Scf5bK3_73: 4588113-4588169 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from pte-mir-35y

• pte-mir-35x: Scf5bK3_73: 4589896-4589952 [-]
• pte-mir-35o-2: Scf5bK3_73: 4588710-4588766 [-]
• pte-mir-35y: Scf5bK3_73: 4588113-4588169 [-]
• pte-mir-35v: Scf5bK3_73: 4584309-4584365 [-]
• pte-mir-35u: Scf5bK3_73: 4583750-4583806 [-]
• pte-mir-35m: Scf5bK3_73: 4580855-4580911 [-]
• pte-mir-35t: Scf5bK3_73: 4579946-4580001 [-]

Database links

• miRBase Tracker:MI0038080

Mature sequence pte-miR-35y-5p

• Accession: MIMAT0046204
• Sequence: 1 - agcaaugaauggcuugguggc - 21
• Evidence: experimental; Illumina [1]

Mature sequence pte-miR-35y-3p

• Accession: MIMAT0046205
• Sequence: 35 - acaccaauucguucauuugcuuu - 57
• Evidence: experimental; Illumina [1]

References

1. PMID:27324919 "Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum" Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP Genome Biol Evol. 8:2133-2144(2016).