miRBase entry: pte-mir-35p

Stem-loop pte-mir-35p


Accession
MI0038076
Description
Parasteatoda tepidariorum pte-mir-35p precursor miRNA


Sequence

GGAAAAAUGUGUUACAUCGGUAAuuuuaugcaaaUCACCGGGUGAGACAUUUUGCAU
...(((((((.((((.(((((.((((.....)))).))))))))).)))))))....

Structure
-GGA       G    A     A    u 
    AAAAUGU UUAC UCGGU Auuu a
    ||||||| |||| ||||| |||| u
    UUUUACA AGUG GGCCA Uaaa g
UACG       G    -     C    c 


Annotation confidence Not enough data
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Genome context
Scf5bK3_3068: 10790-10846 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from pte-mir-35p
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-35p-5p

Accession MIMAT0046196
Description Parasteatoda tepidariorum pte-miR-35p-5p mature miRNA
Sequence 1 - GGAAAAAUGUGUUACAUCGGUAA - 23
Evidence experimental
Illumina [1]

Mature pte-miR-35p-3p

Accession MIMAT0046197
Description Parasteatoda tepidariorum pte-miR-35p-3p mature miRNA
Sequence 35 - UCACCGGGUGAGACAUUUUGCAU - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144