Stem-loop sequence pte-mir-35m

Accession

MI0038072 (change log)

Description

Parasteatoda tepidariorum miR-35m stem-loop

Stem-loop

   --     -     g        g   u u 
5'   agcaa ucaau gcucggug cag g c
     ||||| ||||| |||||||| ||| | u
3'   ucguu aguug ugggccac guc c u
   uu     u     a        a   - g 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: Scf5bK3_73: 4580855-4580911 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from pte-mir-35m

• pte-mir-35x: Scf5bK3_73: 4589896-4589952 [-]
• pte-mir-35o-2: Scf5bK3_73: 4588710-4588766 [-]
• pte-mir-35y: Scf5bK3_73: 4588113-4588169 [-]
• pte-mir-35v: Scf5bK3_73: 4584309-4584365 [-]
• pte-mir-35u: Scf5bK3_73: 4583750-4583806 [-]
• pte-mir-35m: Scf5bK3_73: 4580855-4580911 [-]
• pte-mir-35t: Scf5bK3_73: 4579946-4580001 [-]

Database links

• miRBase Tracker:MI0038072

Mature sequence pte-miR-35m-5p

• Accession: MIMAT0046190
• Sequence: 1 - agcaaucaauggcucgguggc - 21
• Evidence: experimental; Illumina [1]

Mature sequence pte-miR-35m-3p

• Accession: MIMAT0046191
• Sequence: 35 - acaccggguaguugauuugcuuu - 57
• Evidence: experimental; Illumina [1]

References

1. PMID:27324919 "Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum" Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP Genome Biol Evol. 8:2133-2144(2016).