Stem-loop sequence pte-mir-35g

Accession

MI0038068 (change log)

Description

Parasteatoda tepidariorum miR-35g stem-loop

Stem-loop

   --ug            g         guau 
5'     aaauuuuucgcu cggugguuu    a
       |||||||||||| |||||||||     
3'     uuugaaaagugg gccacuaaa    u
   uucg            -         aguu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: Scf5bK3_786: 6402613-6402671 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from pte-mir-35g

• pte-mir-35z: Scf5bK3_786: 6406386-6406445 [-]
• pte-mir-35i: Scf5bK3_786: 6405550-6405606 [-]
• pte-mir-35f: Scf5bK3_786: 6405166-6405222 [-]
• pte-mir-11950: Scf5bK3_786: 6403352-6403408 [-]
• pte-mir-35c: Scf5bK3_786: 6403218-6403274 [-]
• pte-mir-35h: Scf5bK3_786: 6403027-6403083 [-]
• pte-mir-35g: Scf5bK3_786: 6402613-6402671 [-]
• pte-mir-35d: Scf5bK3_786: 6402310-6402366 [-]
• pte-mir-35a: Scf5bK3_786: 6401680-6401736 [-]
• pte-mir-35b: Scf5bK3_786: 6400546-6400602 [-]

Database links

• miRBase Tracker:MI0038068

Mature sequence pte-miR-35g-5p

• Accession: MIMAT0046182
• Sequence: 1 - ugaaauuuuucgcugcggugguu - 23
• Evidence: experimental; Illumina [1]

Mature sequence pte-miR-35g-3p

• Accession: MIMAT0046183
• Sequence: 38 - ucaccgggugaaaaguuugcuu - 59
• Evidence: experimental; Illumina [1]

References

1. PMID:27324919 "Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum" Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP Genome Biol Evol. 8:2133-2144(2016).