Stem-loop sequence pte-mir-35e-1

Accession

MI0038066 (change log)

Description

Parasteatoda tepidariorum miR-35e-1 stem-loop

Stem-loop

   --u       g     u    a   ucaa 
5'    cgaaucu ucacu cggu auu    u
      ||||||| ||||| |||| |||     
3'    guuuaga agugg gcca uaa    u
   uuc       a     -    c   uaac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: Scf5bK3_786: 6359147-6359203 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from pte-mir-35e-1

• pte-mir-35k: Scf5bK3_786: 6359629-6359684 [-]
• pte-mir-35j-2: Scf5bK3_786: 6359442-6359498 [-]
• pte-mir-35e-1: Scf5bK3_786: 6359147-6359203 [-]
• pte-mir-35r-3: Scf5bK3_786: 6356599-6356660 [-]

Database links

• miRBase Tracker:MI0038066

Mature sequence pte-miR-35e-5p

• Accession: MIMAT0046178
• Sequence: 1 - ucgaaucugucacuucgguaauu - 23
• Evidence: experimental; Illumina [1]

Mature sequence pte-miR-35e-3p

• Accession: MIMAT0046179
• Sequence: 36 - ucaccgggugaaagauuugcuu - 57
• Evidence: experimental; Illumina [1]

References

1. PMID:27324919 "Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum" Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP Genome Biol Evol. 8:2133-2144(2016).