Stem-loop sequence pte-mir-35j-2

Accession

MI0038065 (change log)

Description

Parasteatoda tepidariorum miR-35j-2 stem-loop

Stem-loop

   --u             u    aau    a 
5'    cgagucuuucgcu cggu   uuau a
      ||||||||||||| ||||   |||| u
3'    gcuuagaaagugg gcca   aaua g
   uuc             -    -cu    a 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates: Scf5bK3_786: 6359442-6359498 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from pte-mir-35j-2

• pte-mir-35k: Scf5bK3_786: 6359629-6359684 [-]
• pte-mir-35j-2: Scf5bK3_786: 6359442-6359498 [-]
• pte-mir-35e-1: Scf5bK3_786: 6359147-6359203 [-]
• pte-mir-35r-3: Scf5bK3_786: 6356599-6356660 [-]

Database links

• miRBase Tracker:MI0038065

Mature sequence pte-miR-35j-5p

• Accession: MIMAT0046176
• Sequence: 1 - ucgagucuuucgcuucgguaauu - 23
• Evidence: experimental; Illumina [1]

Mature sequence pte-miR-35j-3p

• Accession: MIMAT0046177
• Sequence: 36 - ucaccgggugaaagauucgcuu - 57
• Evidence: experimental; Illumina [1]

References

1. PMID:27324919 "Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum" Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP Genome Biol Evol. 8:2133-2144(2016).