miRBase entry: pte-mir-35j-1

Stem-loop pte-mir-35j-1


Accession
MI0038064
Description
Parasteatoda tepidariorum pte-mir-35j-1 precursor miRNA


Sequence

UCGAGUCUUUCGCUUCGGUAAUUuauaaugaauaaUCACCGGGUGAAAGAUUCGCUU
.(((((((((((((.((((.(((..........))).)))))))))))))))))...

Structure
--U             U    A   uaua 
   CGAGUCUUUCGCU CGGU AUU    a
   ||||||||||||| |||| |||     
   GCUUAGAAAGUGG GCCA Uaa    u
UUC             -    C   uaag 


Annotation confidence Not enough data
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Genome context
Scf5bK3_3068: 12165-12221 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from pte-mir-35j-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-35j-5p

Accession MIMAT0046176
Description Parasteatoda tepidariorum pte-miR-35j-5p mature miRNA
Sequence 1 - UCGAGUCUUUCGCUUCGGUAAUU - 23
Evidence experimental
Illumina [1]

Mature pte-miR-35j-3p

Accession MIMAT0046177
Description Parasteatoda tepidariorum pte-miR-35j-3p mature miRNA
Sequence 36 - UCACCGGGUGAAAGAUUCGCUU - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144