Stem-loop sequence pte-mir-35n-1

Accession

MI0038060 (change log)

Description

Parasteatoda tepidariorum miR-35n-1 stem-loop

Stem-loop

   --u       -      a    a    cuu 
5'    cgaaucu uucucu cggu auuu   a
      ||||||| |||||| |||| ||||   u
3'    guuuaga aagagg gcca uaaa   u
   uuc       u      -    c    aau 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: Scf5bK3_3068: 16552-16610 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from pte-mir-35n-1

• pte-mir-35p: Scf5bK3_3068: 10790-10846 [+]
• pte-mir-35j-1: Scf5bK3_3068: 12165-12221 [+]
• pte-mir-35e-2: Scf5bK3_3068: 12460-12516 [+]
• pte-mir-35n-1: Scf5bK3_3068: 16552-16610 [+]
• pte-mir-35q-1: Scf5bK3_3068: 17321-17380 [+]
• pte-mir-35q-1: Scf5bK3_3068: 17457-17516 [+]
• pte-mir-35r-2: Scf5bK3_3068: 20244-20305 [+]

Database links

• miRBase Tracker:MI0038060

Mature sequence pte-miR-35n-5p

• Accession: MIMAT0046170
• Sequence: 1 - ucgaaucuuucucuacgguaauu - 23
• Evidence: experimental; Illumina [1]

Mature sequence pte-miR-35n-3p

• Accession: MIMAT0046171
• Sequence: 37 - ucaccgggagaauagauuugcuu - 59
• Evidence: experimental; Illumina [1]

References

1. PMID:27324919 "Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum" Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP Genome Biol Evol. 8:2133-2144(2016).