miRBase entry: pte-mir-35n-1

Stem-loop pte-mir-35n-1


Accession
MI0038060
Description
Parasteatoda tepidariorum pte-mir-35n-1 precursor miRNA


Sequence

UCGAAUCUUUCUCUACGGUAAUUucuuauuuaaaaaUCACCGGGAGAAUAGAUUUGCUU
.(((((((((((((.((((.((((.........)))).)))))))))).)))))))...

Structure
--U       -      A    A    cuu 
   CGAAUCU UUCUCU CGGU AUUu   a
   ||||||| |||||| |||| ||||   u
   GUUUAGA AAGAGG GCCA Uaaa   u
UUC       U      -    C    aau 


Annotation confidence Not enough data
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Genome context
Scf5bK3_3068: 16552-16610 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from pte-mir-35n-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-35n-5p

Accession MIMAT0046170
Description Parasteatoda tepidariorum pte-miR-35n-5p mature miRNA
Sequence 1 - UCGAAUCUUUCUCUACGGUAAUU - 23
Evidence experimental
Illumina [1]

Mature pte-miR-35n-3p

Accession MIMAT0046171
Description Parasteatoda tepidariorum pte-miR-35n-3p mature miRNA
Sequence 37 - UCACCGGGAGAAUAGAUUUGCUU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144