miRBase entry: pte-mir-35t

Stem-loop pte-mir-35t


Accession
MI0038059
Description
Parasteatoda tepidariorum pte-mir-35t precursor miRNA


Sequence

AGGUAUUAAUAGCCCGGUGGCagagucguaacugUCACCAGGAGAUUAAUAUGCUU
..((((((((..((.((((((((........)))))))).))..))))))))....

Structure
--AG        AG  C        agu 
    GUAUUAAU  CC GGUGGCag   c
    ||||||||  || ||||||||    
    UAUAAUUA  GG CCACUguc   g
UUCG        GA  A        aau 


Annotation confidence Not enough data
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Genome context
Scf5bK3_73: 4579946-4580001 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from pte-mir-35t
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-35t-5p

Accession MIMAT0046168
Description Parasteatoda tepidariorum pte-miR-35t-5p mature miRNA
Sequence 1 - AGGUAUUAAUAGCCCGGUGGC - 21
Evidence experimental
Illumina [1]

Mature pte-miR-35t-3p

Accession MIMAT0046169
Description Parasteatoda tepidariorum pte-miR-35t-3p mature miRNA
Sequence 35 - UCACCAGGAGAUUAAUAUGCUU - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144