Stem-loop sequence pte-mir-35q-1

Accession

MI0038058 (change log)

Description

Parasteatoda tepidariorum miR-35q-1 stem-loop

Stem-loop

   ---           u       u  ucaaaa 
5'    cgaaauaguuu aucuggu ac      u
      ||||||||||| ||||||| ||       
3'    guuuuaucaag uaggcca ug      u
   uug           -       c  uuaaaa 

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates	Overlapping transcripts
Scf5bK3_3068: 17321-17380 [+]	intergenic
Scf5bK3_3068: 17457-17516 [+]	intergenic

Clustered miRNAs

< 10kb from pte-mir-35q-1

• pte-mir-35p: Scf5bK3_3068: 10790-10846 [+]
• pte-mir-35j-1: Scf5bK3_3068: 12165-12221 [+]
• pte-mir-35e-2: Scf5bK3_3068: 12460-12516 [+]
• pte-mir-35n-1: Scf5bK3_3068: 16552-16610 [+]
• pte-mir-35q-1: Scf5bK3_3068: 17321-17380 [+]
• pte-mir-35q-1: Scf5bK3_3068: 17457-17516 [+]
• pte-mir-35r-2: Scf5bK3_3068: 20244-20305 [+]

Database links

• miRBase Tracker:MI0038058

Mature sequence pte-miR-35q-1-5p

• Accession: MIMAT0046166
• Sequence: 1 - cgaaauaguuuuaucugguuacu - 23
• Evidence: experimental; Illumina [1]

Mature sequence pte-miR-35q-3p

• Accession: MIMAT0046167
• Sequence: 39 - caccggaugaacuauuuugguu - 60
• Evidence: experimental; Illumina [1]

References

1. PMID:27324919 "Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum" Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP Genome Biol Evol. 8:2133-2144(2016).