Stem-loop sequence pte-mir-35q-1

AccessionMI0038058 (change log)
DescriptionParasteatoda tepidariorum miR-35q-1 stem-loop
Stem-loop
   ---           u       u  ucaaaa 
5'    cgaaauaguuu aucuggu ac      u
      ||||||||||| ||||||| ||       
3'    guuuuaucaag uaggcca ug      u
   uug           -       c  uuaaaa 
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates Overlapping transcripts
Scf5bK3_3068: 17321-17380 [+]
intergenic
Scf5bK3_3068: 17457-17516 [+]
intergenic
Clustered miRNAs
< 10kb from pte-mir-35q-1
pte-mir-35pScf5bK3_3068: 10790-10846 [+]
pte-mir-35j-1Scf5bK3_3068: 12165-12221 [+]
pte-mir-35e-2Scf5bK3_3068: 12460-12516 [+]
pte-mir-35n-1Scf5bK3_3068: 16552-16610 [+]
pte-mir-35q-1Scf5bK3_3068: 17321-17380 [+]
pte-mir-35q-1Scf5bK3_3068: 17457-17516 [+]
pte-mir-35r-2Scf5bK3_3068: 20244-20305 [+]
Database links

Mature sequence pte-miR-35q-1-5p

Accession MIMAT0046166
Sequence

1 - 

cgaaauaguuuuaucugguuacu

 - 23

Get sequence
Evidence experimental; Illumina [1]

Mature sequence pte-miR-35q-3p

Accession MIMAT0046167
Sequence

39 - 

caccggaugaacuauuuugguu

 - 60

Get sequence
Evidence experimental; Illumina [1]

References

1
PMID:27324919 "Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum" Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP Genome Biol Evol. 8:2133-2144(2016).