Stem-loop sequence pte-mir-35c

Accession

MI0038056 (change log)

Description

Parasteatoda tepidariorum miR-35c stem-loop

Stem-loop

   --ca            g         aga 
5'     aaauuuuucgcu cggugguuu   u
       |||||||||||| |||||||||    
3'     uuugaaaagcgg gccacuaaa   u
   uucg            -         agu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: Scf5bK3_786: 6403218-6403274 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from pte-mir-35c

• pte-mir-35z: Scf5bK3_786: 6406386-6406445 [-]
• pte-mir-35i: Scf5bK3_786: 6405550-6405606 [-]
• pte-mir-35f: Scf5bK3_786: 6405166-6405222 [-]
• pte-mir-11950: Scf5bK3_786: 6403352-6403408 [-]
• pte-mir-35c: Scf5bK3_786: 6403218-6403274 [-]
• pte-mir-35h: Scf5bK3_786: 6403027-6403083 [-]
• pte-mir-35g: Scf5bK3_786: 6402613-6402671 [-]
• pte-mir-35d: Scf5bK3_786: 6402310-6402366 [-]
• pte-mir-35a: Scf5bK3_786: 6401680-6401736 [-]
• pte-mir-35b: Scf5bK3_786: 6400546-6400602 [-]

Database links

• miRBase Tracker:MI0038056

Mature sequence pte-miR-35c-5p

• Accession: MIMAT0046162
• Sequence: 1 - caaaauuuuucgcugcggugguu - 23
• Evidence: experimental; Illumina [1]

Mature sequence pte-miR-35c-3p

• Accession: MIMAT0046163
• Sequence: 36 - ucaccgggcgaaaaguuugcuu - 57
• Evidence: experimental; Illumina [1]

References

1. PMID:27324919 "Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum" Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP Genome Biol Evol. 8:2133-2144(2016).