miRBase entry: pte-mir-305

Stem-loop pte-mir-305


Accession
MI0038052
Description
Parasteatoda tepidariorum pte-mir-305 precursor miRNA

Literature search
1 open access papers mention pte-mir-305
(1 sentences)

Sequence

UUUGUACUUCAUUAGGUGCUCugguguaaacgagauuccAGGCAUCUAAGGGAGUGCAAAUG
((((((((((.((((((((.((((.((.......)).)))))))))))).))))))))))..

Structure
--          A        U    u  aa 
  UUUGUACUUC UUAGGUGC Cugg gu  a
  |||||||||| |||||||| |||| ||  c
  AAACGUGAGG AAUCUACG GAcc ua  g
GU          G        -    u  ga 


Annotation confidence Not enough data
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Genome context
Scf5bK3_1778: 111273-111334 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pte-mir-305
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-305-5p

Accession MIMAT0046154
Description Parasteatoda tepidariorum pte-miR-305-5p mature miRNA
Sequence 1 - UUUGUACUUCAUUAGGUGCUC - 21
Evidence experimental
Illumina [1]

Mature pte-miR-305-3p

Accession MIMAT0046155
Description Parasteatoda tepidariorum pte-miR-305-3p mature miRNA
Sequence 40 - AGGCAUCUAAGGGAGUGCAAAUG - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144