miRBase entry: pte-mir-2g-2

Stem-loop pte-mir-2g-2


Accession
MI0038050
Description
Parasteatoda tepidariorum pte-mir-2g-2 precursor miRNA

Literature search
2 open access papers mention pte-mir-2g-2
(17 sentences)

Sequence

UUGCAAACUGAUACUGUGAUGUGuaaauucaaauaucaUAUCACAGCCAGCUUUGAUGAG
...(((((((...((((((((((.............)))))))))).))).)))).....

Structure
--UUG    -   AUA          uaaau 
     CAAA CUG   CUGUGAUGUG     u
     |||| |||   ||||||||||     c
     GUUU GAC   GACACUAUac     a
GAGUA    C   --C          uauaa 


Annotation confidence Not enough data
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Genome context
Scf5bK3_5995: 359230-359289 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from pte-mir-2g-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-2g-3p

Accession MIMAT0046150
Description Parasteatoda tepidariorum pte-miR-2g-3p mature miRNA
Sequence 39 - UAUCACAGCCAGCUUUGAUGAG - 60
Evidence experimental
Illumina [1]

Mature pte-miR-2g-2-5p

Accession MIMAT0046151
Description Parasteatoda tepidariorum pte-miR-2g-2-5p mature miRNA
Sequence 1 - UUGCAAACUGAUACUGUGAUGUG - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144