Stem-loop sequence pte-mir-2e

Accession

MI0038047 (change log)

Description

Parasteatoda tepidariorum miR-2e stem-loop

Literature search

2 open access papers mention pte-mir-2e
(17 sentences)

Stem-loop

   --         -         a   -  uu 
5'   acgucgaag uggcuguga aug ua  c
     ||||||||| ||||||||| ||| ||  a
3'   ugcaguuuc aucgacacu uac au  c
   ug         u         a   c  uu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: Scf5bK3_5995: 356661-356719 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from pte-mir-2e

• pte-mir-71-1: Scf5bK3_5995: 356520-356577 [+]
• pte-mir-2e: Scf5bK3_5995: 356661-356719 [+]
• pte-mir-2c: Scf5bK3_5995: 356792-356849 [+]
• pte-mir-2b-2: Scf5bK3_5995: 359128-359188 [+]
• pte-mir-2g-2: Scf5bK3_5995: 359230-359289 [+]
• pte-mir-2g-1: Scf5bK3_5995: 359336-359391 [+]
• pte-mir-2d: Scf5bK3_5995: 359448-359508 [+]

Database links

• miRBase Tracker:MI0038047

Mature sequence pte-miR-2e-5p

• Accession: MIMAT0046145
• Sequence: 1 - acgucgaaguggcugugaaaug - 22
• Evidence: experimental; Illumina [1]

Mature sequence pte-miR-2e-3p

• Accession: MIMAT0046146
• Sequence: 37 - uaucacagcuaucuuugacgugu - 59
• Evidence: experimental; Illumina [1]

References

1. PMID:27324919 "Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum" Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP Genome Biol Evol. 8:2133-2144(2016).