Stem-loop sequence pte-let-7

Accession

MI0038014 (change log)

Description

Parasteatoda tepidariorum let-7 stem-loop

Literature search

1 open access papers mention pte-let-7
(4 sentences)

Stem-loop

   -u     -                 a aa uacac 
5'   gaggu aguagguuguauaguuu g  c     c
     ||||| ||||||||||||||||| |  |      
3'   uuuca ucguucgacauaucaag c  g     u
   cc     a                 - gg uaauu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: Scf5bK3_446: 4924728-4924796 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0038014

Mature sequence pte-let-7-5p

• Accession: MIMAT0046082
• Sequence: 1 - ugagguaguagguuguauaguu - 22
• Evidence: experimental; Illumina [1]

Mature sequence pte-let-7-3p

• Accession: MIMAT0046083
• Sequence: 48 - cuauacagcuugcuaacuuucc - 69
• Evidence: experimental; Illumina [1]

References

1. PMID:27324919 "Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum" Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP Genome Biol Evol. 8:2133-2144(2016).