miRBase entry: mes-MIR535d

Stem-loop mes-MIR535d


Accession
MI0037917
Description
Manihot esculenta mes-MIR535d precursor miRNA

Literature search
4 open access papers mention mes-MIR535d
(9 sentences)

Sequence

guucccuuaguguugacauaauuggUUGACGACGAGAGAGAGCACGcauguuagcauucaugcugugaucaugguugucuacaagugugcucccuaccgucgucaugcaauaugcucaaauaacguuugugcu
............((((((((.(((..((((((((..((.((((((((.(((..(((.(((((.......))))).)))..))).)))))))).))..))))))))..))))))).))))..............

Structure
--guucccuuagug    -    a   gU        AG  A        a   ua   u     cu 
              uuga caua uug  UGACGACG  AG GAGCACGc ugu  gca ucaug  g
              |||| |||| |||  ||||||||  || |||||||| |||  ||| |||||  u
              aacu guau aac  acugcugc  uc cucgugug aca  ugu gguac  g
ucguguuugcaaua    c    -   gu        ca  c        a   uc   u     ua 


Annotation confidence Not enough data
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Genome context
scaffold01190: 159468-159600 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mes-MIR535d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mes-miR535d

Accession MIMAT0045981
Description Manihot esculenta mes-miR535d mature miRNA
Sequence 26 - UUGACGACGAGAGAGAGCACG - 46
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26822616
    High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
    Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
    BMC Genomics (2016) 17:85