miRBase entry: tca-mir-11649

Stem-loop tca-mir-11649

Accession

MI0037462

Description

Tribolium castaneum tca-mir-11649 precursor miRNA

Sequence

cggccggucgcaggccagaaauuauaccguugagagaUUUCUGCCUUUGACGGGUUCGCUu
.((((.((((.((((.(((((((............))))))))))).)))).)))).....

Structure

----c    g    c    c       auacc 
     ggcc gucg aggc agaaauu     g
     |||| |||| |||| |||||||      
     UUGG CAGU UCCG UCUUUag     u
uUCGC    G    U    -       agagu

Annotation confidence Not enough data

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Genome context

ChLG4: 6991684-6991744 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-11649

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-11649-3p

Accession	MIMAT0045627
Description	Tribolium castaneum tca-miR-11649-3p mature miRNA
Sequence	38 - UUUCUGCCUUUGACGGGUUCGCU - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96