miRBase entry: tca-mir-3851p

Stem-loop tca-mir-3851p


Accession
MI0037458
Description
Tribolium castaneum tca-mir-3851p precursor miRNA


Sequence

gGGUUAGCAUAAGUGGUACCauaaaaauuuuuaauccaUAGUACGACAAUGCCAACUCAGu
(((((.((((..((.((((.....................)))).)).)))).)))))...

Structure
---     A    AA  G    Cauaaaaau 
   gGGUU GCAU  GU GUAC         u
   ||||| ||||  || ||||         u
   CUCAA CGUA  CA CAUG         u
uGA     C    -A  G    AUaccuaau 


Annotation confidence Not enough data
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Genome context
Unmapped58: 22963-23023 [+]
Clustered miRNAs
9 other miRNAs are < 10 kb from tca-mir-3851p
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3851p-5p

Accession MIMAT0045624
Description Tribolium castaneum tca-miR-3851p-5p mature miRNA
Sequence 2 - GGUUAGCAUAAGUGGUACC - 20
Evidence experimental
Illumina [1]

Mature tca-miR-3851p-3p

Accession MIMAT0045625
Description Tribolium castaneum tca-miR-3851p-3p mature miRNA
Sequence 39 - UAGUACGACAAUGCCAACUCAG - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96