miRBase entry: tca-mir-11648

Stem-loop tca-mir-11648


Accession
MI0037457
Description
Tribolium castaneum tca-mir-11648 precursor miRNA


Sequence

UCACAAGAUUGAAUAGGACCGGGCUaagagggucacccugucucacUCCACGGAGCAUCCUUAUCGGUCUUGu
..((((((((((..(((((((((...(((.((.....)).)))....)).)))....))))..))))))))))

Structure
UC          AU    ----   -  -CUa   g  u 
  ACAAGAUUGA  AGGA    CCG GG    aga gg c
  ||||||||||  ||||    ||| ||    ||| || a
  uGUUCUGGCU  UCCU    GGC CC    ucu uc c
--          AU    ACGA   A  Ucac   g  c 


Annotation confidence Not enough data
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Genome context
ChLGY: 151574-151646 [+]

Database links

Mature tca-miR-11648-5p

Accession MIMAT0045622
Description Tribolium castaneum tca-miR-11648-5p mature miRNA
Sequence 1 - UCACAAGAUUGAAUAGGACCGGGCU - 25
Evidence experimental
Illumina [1]

Mature tca-miR-11648-3p

Accession MIMAT0045623
Description Tribolium castaneum tca-miR-11648-3p mature miRNA
Sequence 47 - UCCACGGAGCAUCCUUAUCGGUCUUG - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96