miRBase entry: tca-mir-927c

Stem-loop tca-mir-927c


Accession
MI0037453
Description
Tribolium castaneum tca-mir-927c precursor miRNA


Sequence

UUCAGAAUCCAAACGCUUUGccagccuuucacacGGUAAAGCGUAGGAAUUCUAAAccg
...(((((((..((((((((((............)))))))))).)).)))))......

Structure
---UUC     -  AA          agccu 
      AGAAU CC  ACGCUUUGcc     u
      ||||| ||  ||||||||||      
      UCUUA GG  UGCGAAAUGG     u
gccAAA     A  -A          cacac 


Annotation confidence Not enough data
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Genome context
ChLG9: 11531399-11531457 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from tca-mir-927c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-927c-5p

Accession MIMAT0045616
Description Tribolium castaneum tca-miR-927c-5p mature miRNA
Sequence 1 - UUCAGAAUCCAAACGCUUUG - 20
Evidence experimental
Illumina [1]

Mature tca-miR-927c-3p

Accession MIMAT0045617
Description Tribolium castaneum tca-miR-927c-3p mature miRNA
Sequence 35 - GGUAAAGCGUAGGAAUUCUAAA - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96